WebMEME-ChIP will look for motifs enriched in the primary sequences relative to this control set of sequences in FASTA format . These sequences will be input as control sequences to MEME, STREME and CentriMo. MEME will use its "Differential Enrichment" objective function. When this option is used, the primary and control sequences should all be ... WebIntroduction. In this vignette, we’ll explore using memes to deeply analyze a set of ChIP-seq peaks to identify motifs to explain differences in transcription factor binding, and consequences to chromatin accessibility at these ChIP peaks. We will use a dataset from (Nystrom, 2024) which investigated the binding of the transcription factor ...
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